I created a new virtual host and managed it using Virtualmin GPL. Uploaded Drupal 7.31 to the document root and got an internal server error 500.
I investigated the apache error logs and found out this line on tail
.htaccess: Option FollowSymLinks not allowed here
Solution:
Edited .htaccess and changed
Options
Option +SymLinksIfOwnerMatch
It's working now but I'm not sure of the performance impacts as stat-ing the file is theoretically slower now.